#
# @BEGIN LICENSE
#
# Psi4: an open-source quantum chemistry software package
#
# Copyright (c) 2019 The Psi4 Developers.
#
# The copyrights for code used from other parties are included in
# the corresponding files.
#
# This file is part of Psi4.
#
# Psi4 is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License as published by
# the Free Software Foundation, version 3.
#
# Psi4 is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public License along
# with Psi4; if not, write to the Free Software Foundation, Inc.,
# 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
#
# @END LICENSE
#
import sys
import time
import numpy as np
import psi4
try:
from ipi.interfaces.clients import Client
ipi_available = True
except ImportError:
ipi_available = False
# Define Client to enable testing of the Broker in the unittests
class Client():
pass
class IPIBroker(Client):
def __init__(self, LOT, options=None, serverdata=False, molecule=None):
self.serverdata = serverdata
if not ipi_available:
psi4.core.print_out("i-pi is not available for import: ")
psi4.core.print_out("The broker infrastructure will not be available!\n")
super(IPIBroker, self).__init__()
elif serverdata:
mode, address, port = serverdata.split(":")
mode = mode.lower()
super(IPIBroker, self).__init__(address=address, port=port, mode=mode)
else:
super(IPIBroker, self).__init__(_socket=False)
self.LOT = LOT
self.options = options if options else {}
if molecule is None:
molecule = psi4.core.get_active_molecule()
self.initial_molecule = molecule
assert self.initial_molecule.orientation_fixed() == True, "Orientation must be fixed!"
assert self.initial_molecule.point_group().symbol() == "c1", "Symmetry must be 'c1'!"
names = [self.initial_molecule.symbol(i) for i in range(self.initial_molecule.natom())]
psi4.core.print_out("Initial atoms %s\n" % names)
self.atoms_list = names
psi4.core.print_out("Psi4 options:\n")
for item, value in self.options.items():
psi4.core.print_out("%s %s\n" % (item, value))
psi4.core.set_global_option(item, value)
psi4.core.IO.set_default_namespace("xwrapper")
self.timing = {}
atoms = np.array(self.initial_molecule.geometry())
psi4.core.print_out("Initial atoms %s\n" % atoms)
psi4.core.print_out("Force:\n")
self._positions = atoms
self._callback = self.callback
self._nat = np.int32(len(atoms))
def calculate_force(self, pos=None, **kwargs):
"""Fetch force, energy of PSI.
Arguments:
- pos: positions of the atoms as array. If None, the positions of the current active
molecule is used.
"""
if pos is None:
molecule = psi4.core.get_active_molecule()
pos = np.array(molecule.geometry())
self._force, self._potential = self.callback(pos, **kwargs)
return self._force, self._potential
def callback(self, pos, **kwargs):
"""Initialize psi with new positions and calculate force.
Arguments:
- pos: positions of the atoms as array.
"""
self.initial_molecule.set_geometry(psi4.core.Matrix.from_array(pos))
self.calculate_gradient(self.LOT, pos=pos, **kwargs)
self._potential = psi4.variable('CURRENT ENERGY')
self._force = -np.array(self.grd)
self._vir = np.array([[0.0,0.0,0.0],[0.0,0.0,0.0],[0.0,0.0,0.0]])
return self._force, np.float64(self._potential)
def calculate_gradient(self, LOT, bypass_scf=False, **kwargs):
"""Calculate the gradient with @LOT.
When bypass_scf=True a hf energy calculation has been done before.
"""
start = time.time()
self.grd = psi4.gradient(LOT, bypass_scf=bypass_scf, **kwargs)
time_needed = time.time() - start
self.timing[LOT] = self.timing.get(LOT, []) + [time_needed]
[docs]def ipi_broker(LOT, molecule=None, serverdata=False, options=None):
""" Run IPIBroker to connect to i-pi
Arguments:
molecule: Initial molecule
serverdata: Configuration where to connect to ipi
options: any additional Psi4 options
"""
b = IPIBroker(LOT, molecule=molecule, serverdata=serverdata, options=options)
try:
if b.serverdata:
b.run()
else:
return b
except KeyboardInterrupt:
psi4.core.print_out("Killing IPIBroker\n")
b.__del__() # lgtm [py/explicit-call-to-delete]
sys.exit(1)
